Member Listing

Name

Claudio Angione

Title

Dr

Other Affiliation

Computer Laboratory

Role

Principal Investigator

Research Summary

Multi-omic metabolic modelling
Constrain-based optimization
Systems biology
Multi-objective optimisation
Organelle models
Computation with molecular machines

Expertise

Bioinformatics, Cell Biology, Computational Biology, Systems Biology

Selected Publications

14.   C. Angione and P. Lió, “Predictive analytics of environmental adaptability in multi-omic network models”, Nature Scientific Reports, 2015. to appear

13.   C. Angione, J. Costanza, G. Carapezza, P. Lió, and G. Nicosia, “Multi-target analysis and design of mitochondrial metabolism”, PLoS One, 10(9):e0133825, 2015

12.   C. Angione, N. Pratanwanich, and P. Lió, “A hybrid of metabolic flux analysis and Bayesian factor modeling for multi-omics temporal pathway activation”, ACS Synthetic Biology, 4(8):880-889, 2015

11.   M. Conway, C. Angione, and P. Lió, “Iterative multi-level calibration of metabolic networks”, Current Bioinformatics, 2015 (to appear)

10.   C. Angione, J. Costanza, G. Carapezza, P. Lió, and G. Nicosia, “Analysis and Design of Molecular Machines”, Theoretical Computer Science, 599:102-117, 2015

9.   M. Taffi, N. Paoletti, C. Angione, S. Pucciarelli, M. Marini and P. Lió, “Bioremediation in marine ecosystems: a computational study combining ecological modelling and flux balance analysis”, Frontiers in Genetics – Systems Biology, 5:319, 2014 – Featured in Basler and Simeonidis’ commentary article

8.   C. Angione, A. Occhipinti, and G. Nicosia, “Satisfiability by Maxwell-Boltzmann and Bose-Einstein Statistical Distributions”, ACM Journal of Experimental Algorithmics, 1.4(19), 2014

7.   C. Angione, G. Carapezza, J. Costanza, P. Lió, and G. Nicosia, “Design and strain selection criteria for bacterial communication networks”, Nano Communication Networks, 4(4):155-163, 2013

6.   C. Angione, G. Carapezza, J. Costanza, P. Lió, and G. Nicosia, “Pareto Optimality in Organelle Energy Metabolism Analysis”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10(4):1032-1044, 2013

5.   C. Angione, J. Costanza, G. Carapezza, P. Lió, and G. Nicosia, “A Design Automation Framework for Computational Bioenergetics in Biological Networks”, Molecular BioSystems, 9(10):2554-2564, 2013

4.   C. Angione, A. Occhipinti, G. Stracquadanio, and G. Nicosia, “Bose-Einstein Condensation in Satisfiability Problems”, European Journal of Operational Research, 227(1):44-54, 2013 – Featured in Le Scienze – Scientific American

3.   G. Carapezza, R. Umeton, J. Costanza, C. Angione, G. Stracquadanio, A. Papini, P. Lió, G. Nicosia, “Efficient Behavior of Photosynthetic Organelles via Pareto Optimality, Identifiability and Sensitivity Analysis”, ACS Synthetic Biology, 2(5):274-288, 2013

2.   C. Angione, P. Lió, and G. Nicosia, “How to Compute with Metabolism in Bacteria?”, ERCIM News, 12, 2012

1.   J. Costanza, G. Carapezza, C. Angione, P. Lió, and G. Nicosia, “Robust Design of Microbial Strains”, Bioinformatics, 28(23):3097-3104, 2012